cgranges_t

genomic ranges

extern (C) @nogc nothrow

struct cgranges_t {

cr_intv_t* r;

int32_t n_ctg;

int32_t m_ctg;

cr_ctg_t* ctg;

}

Members

Variables

ctg cr_ctg_t* ctg;: list of contigs (of size _n_ctg_)
hc void* hc;: dictionary for converting contig names to integers
m_ctg int32_t m_ctg;: number and max number of contigs +//// number and max number of contig
m_r int64_t m_r;: number and max number of intervals +//// number and max number of interval
n_ctg int32_t n_ctg;: number and max number of contigs
n_r int64_t n_r;: number and max number of intervals
r cr_intv_t* r;: list of intervals (of size _n_r_)

Meta

Source

See Implementation

intervaltree cgranges functions

static variables

structs