intervaltree.cgranges

Undocumented in source.

Members

cr_add cr_intv_t* cr_add(cgranges_t* cr, const(char)* ctg, int32_t st, int32_t en, int32_t label_int, void* data): Add an interval (JSB: data param)
cr_add_ctg int32_t cr_add_ctg(cgranges_t* cr, const(char)* ctg, int32_t len): Add a contig and length. Call this for desired contig ordering. _len_ can be 0.
cr_destroy void cr_destroy(cgranges_t* cr): Deallocate
cr_en int32_t cr_en(const(cr_intv_t)* r)
cr_end int32_t cr_end(const(cgranges_t)* cr, int64_t i): retrieve start and end positions from a cr_intv_t object
cr_get_ctg int32_t cr_get_ctg(cgranges_t* cr, const(char)* ctg): Get the contig ID given its name
cr_index void cr_index(cgranges_t* cr): Sort and index intervals
cr_init cgranges_t* cr_init(): Initialize
cr_label int32_t cr_label(const(cgranges_t)* cr, int64_t i): retrieve start and end positions from a cr_intv_t object
cr_overlap
int64_t cr_overlap(const(cgranges_t)* cr, const(char)* ctg, int32_t st, int32_t en, int64_t** b_, int64_t* m_b_): Find (and count) overlaps
cr_st int32_t cr_st(const(cr_intv_t)* r)
cr_start int32_t cr_start(const(cgranges_t)* cr, int64_t i): retrieve start and end positions from a cr_intv_t object

_iitree_visited int32_t* _iitree_visited;: Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
_iitree_visited_capacity int32_t _iitree_visited_capacity;: Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
_iitree_visited_size int32_t _iitree_visited_size;: Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.